Welcome to Dejing Dou's homepage

I am an Assistant Professor in Computer and Information Science Department at the University of Oregon. I received my Ph.D. degree in 2004 at Yale University under the direction of Prof. Drew McDermott. I received my B.E. degree in 1996 at Tsinghua University. Here is my Curriculum Vitae.

Research Interests:

  • Artificial Intelligence (Specially in Ontology)
  • Data Mining
  • Data Integration
  • Medical Informatics and Bioinformatics
  • The Semantic Web

    • My Lab and Research Projects:

    The Advanced Integration and Mining Lab (AIM Lab)

    Publications:

    (A complete list of my publications in BibTeX format)
  • Paea LePendu, Dejing Dou and Doug Howe 2009. Detecting Inconsistencies in the Gene Ontology using Ontology Databases with Not-gadgets. In Proceedings of the International Conference on Ontologies, Databases and Application of SEmantics (ODBASE 2009). pp. 948-965, 2009.
  • Daya Wimalasuriya and Dejing Dou 2009. Using Multiple Ontologies in Information Extraction. In Proceedings of the 18th ACM Conference on Information and Knowledge Management (CIKM 2009). pp. 235-244, 2009.
  • Gwen Frishkoff, Paea LePendu, Robert Frank, Haishan Liu and Dejing Dou 2009. Development of Neural Electromagnetic Ontologies (NEMO): Ontology-based Tools for Representation and Integration of Event-related Brain Potentials. In Proceedings of the International Conference on Biomedical Ontology (ICBO 2009). pp. 31-34, 2009
  • Haishan Liu and Dejing Dou 2008. An Exploration of Understanding Heterogeneity through Data Mining. In Proceedings of KDD'08 Workshop on Mining Multiple Information Sources (MMIS 2008). pp. 18-25, 2008.
  • Paea LePendu, Dejing Dou, Gwen Frishkoff and Jiawei Rong 2008. Ontology Database: a New Method for Semantic Modeling and an Application to Brainwave Data. In Proceedings of the 20th International Conference on Scientific and Statistical Database Management (SSDBM 2008). LNCS 5069, pp. 313-330, 2008.
  • Gwen A. Frishkoff, Robert M. Frank, Jiawei Rong, Dejing Dou, Joseph Dien and Laura K. Halderman 2007. A Framework to Support Automated Classification and Labeling of Brain Electromagnetic Patterns. Computational Intelligence and Neuroscience, Special Issue, EEG/MEG Analysis and Signal Processing. Volume 7, Number 3, pp. 1-13, 2007.
  • Han Qin, Dejing Dou and Paea LePendu 2007. Discovering Executable Semantic Mappings Between Ontologies. In Proceedings of International Conference on Ontologies, Databases and Applications of SEmantics (ODBASE 2007). LNCS 4803, pp. 832-849.
  • Dejing Dou, Gwen Frishkoff, Jiawei Rong, Robert Frank, Allen Malony and Don Tucker 2007. Development of NeuroElectroMagnetic Ontologies (NEMO): A Framework for Mining Brainwave Ontologies. In Proceedings of 13th ACM International Conference on Knowledge Discovery and Data Mining (KDD'07). pp. 270-279. (A Candidate for Best Research Paper Award).
  • Jongwan Kim, Dejing Dou, Haishan Liu and Donghwi Kwak 2007. Constructing A User Preference Ontology for Anti-spam Mail Systems. In Proceedings of the 20th Canadian Conference on Artificial Intelligence (Canadian AI'07). LNCS/LNAI 4509, pp. 272-283.
  • Jiawei Rong, Dejing Dou, Gwen Frishkoff, Robert Frank, Allen Malony and Don Tucker 2007. A Semi-automatic Framework for Mining ERP Patterns. In Proceedings of the 2007 IEEE International Symposium on Data Mining and Information Retrieval (IEEE DMIR-07), pp. 329-334.
  • Dejing Dou, Jun Li, Han Qin, Shiwoong Kim and Sheng Zhong 2007. Understanding and Utilizing the Hierarchy of Abnormal BGP Events. In Proceedings of SIAM International Conference on Data Mining 2007 (SDM 2007) (short paper). pp. 467-472.
  • Daya Wimalasuriya, Sridhar Ramachandran and Dejing Dou 2007. Clustering Zebrafish Genes Based on Frequent-Itemsets and Frequency Levels. In Proceedings of Pacific-Asia Conference on Knowledge Discovery and Data Mining 2007 (PAKDD 2007) (short paper). LNCS 4426, pp. 912-920.
  • Dejing Dou and Drew McDermott 2006b. Towards Theory Translation. In Post-Proceedings of the 4th International Workshop on Declarative Agent Languages and Technologies (DALT 2006) (invited paper) LNCS/LNAI 4327, pp. 16-28.
  • Dejing Dou, Jeff Z. Pan, Han Qin and Paea LePendu 2006. Towards Populating and Querying the Semantic Web. In Proceedings of the 2nd International Workshop on Scalable Semantic Web Knowledge Base Systems (SSWS 2006). pp. 129-142, co-located with ISWC 2006.
  • Dejing Dou and Drew McDermott 2006a. Deriving Axioms Across Ontologies. In Proceedings of International Joint conference on Autonomous Agents and Multi-Agent Systems (AAMAS'06) (short paper). pp. 952-954. (We are invited to submit an extended version of this paper to the post-proceedings of DALT 2006.)
  • Dejing Dou, Paea LePendu, Shiwoong Kim and Peishen Qi 2006. Integrating Databases into the Semantic Web through an Ontology-based Framework. In Proceedings of 3rd International workshop on Semantic Web and Databases (SWDB'06). pp. 54, co-located with ICDE 2006.
  • Dejing Dou and Paea LePendu 2005. Ontology-based Integration for Relational Databases. In Proceedings of ACM Symposium on Applied computing (SAC'06). pp. 461-466. (A preliminary short version appeared in ODBASE 2005 as a poster paper, LNCS 3762, pp. 35-36.)
  • Jun Li, Dejing Dou, Zhen Wu, Shiwoong Kim and Vikash Agarwal 2005. An Internet Routing Forensics Framework for Discovering Rules of Abnormal BGP Events. ACM Computer Communication Review . Volume 35, Number 5, pp. 58-66, October 2005.
  • Dejing Dou, Drew McDermott and Peishen Qi 2004. Ontology Translation on the Semantic Web. Journal on Data Semantics, Volume II, LNCS 3360, pp. 35-57. (invited submission)
  • Dejing Dou, Drew McDermott, and Peishen Qi 2003. Ontology Translation on the Semantic Web. In Proceedings of International Conference on Ontologies, Databases and Applications of SEmantics (ODBASE 2003). LNCS 2888, pp. 952-969. (We are invited to submit an extended version of this paper to Journal on Data Semantics.)
  • Dejing Dou, Drew McDermott, and Peishen Qi 2002. Ontology translation by ontology merging and automated reasoning. In Proceedings of EKAW2002 Workshop on Ontologies for Multi-Agent Systems (OMAS 2002). pp. 3-18. (Extended version is in a volume of best papers from the proceedings of OAS2002, OMAS2002 and OAS2003)
  • Drew McDermott and Dejing Dou 2002. Representing disjunction and quantifiers in RDF. In Proceedings of International Semantic Web Conference (ISWC 2002). LNCS 2342, pp. 250-263.

    • Current Students:

  • (Ph.D. students) Paea LePendu, Han Qin, Haishan Liu, Daya Wimalasuriya, Fernando Gutierrez
  • (Masters students) David Lebech

    Teaching:

  • CIS471/571: Introduction to Artificial Intelligence (Winter 2006).
  • CIS453/553: Data Mining (Spring 2005, Spring 2006, Winter 2007, Winter 2008).
  • CIS410/510: Machine Learning (Spring 2007, Winter 2009).
  • CIS451/551: Database Processing (Winter 2005, Fall 2005, Fall 2006).
  • CIS607: Semantic Information Integration (Fall 2004, Fall 2005, Fall 2006, Winter 2008).
  • CIS607: Data Mining and Data Integration in Bioinformatics (Winter 2009).
  • CIS212: Introduction to Computer Science (Spring 2008, Spring 2009).
  • DSC433/533: Information Analysis for Managerial Decisions (Invited Course for Department of Decision Sciences in the Lundquist College of Business, Fall 2008)

    Academic Activities:

  • Program Chairs: ISDPE 2010

  • Program Committees: DEXA 2010,ICDM 2009, MMIS 2009,IPCCC 2009,DEXA 2009, KDIR 2009,SDM 2009, PAKDD 2009, IEEE GrC 09, KDD 2008, ECML/PKDD 2008, SDM 2008, WWW 2008 Posters, KDD-08 Workshop on Mining Multiple Information Sources, CIS-2008, IEEE GrC 08, AAAI Spring Symposium Series SSKI 2008, IEEE GrC 07, ISDPE'07, AAAI'07 Workshop on Semantic E-Science, IEEE GrC 06, ICDM 2005 Workshop on MultiAgent Data Warehousing and MultiAgent Data Mining

  • Grant Proposal Reviews: Panelist for NSF CDI, February, 2008; Panelist for NSF IIS, February, 2008; Panelist for NSF IIS, June, 2007; Panelist for NSF OCI, April, 2007; Grant Review for Louisiana Board of Regents, December, 2008; Grant Proposal Review for The Netherlands Organization for Scientific Research (NWO), February, 2007.

  • Paper Reviews: IEEE Transactions on Systems, Man, and Cybernetics Part A: October, 2009; Journal of Knowledge and Information Systems (KAIS), October, 2009; Journal Intelligent Information Systems (JIIS), September, 2009; IEEE Transactions on Systems, Man, and Cybernetics Part B: August, 2009; Data & Knowledge Engineering (DKE) Journal, July, 2009; Journal Intelligent Information Systems (JIIS), June, 2009; Data & Knowledge Engineering (DKE) Journal, May, 2009; Statistical Analysis and Data Mining (SAM) Journal, May, 2008; Data & Knowledge Engineering (DKE) Journal, November, 2007; Journal of Biomedical Informatics (JBI), October, 2007; IEEE Transactions on Knowledge and Data Engineering (TKDE), May, 2007; IEEE Transactions on Systems, Man, and Cybernetics Part C: Applications and Reviews, January, 2006; International Journal of Data Mining and Bioinformatics, December, 2005; International Journal on Semantic Web and Information Systems, December, 2004; WWW2003 Semantic Web track, December, 2002.

    Software for download:

  • OntoEngine

    • My family

    Here are some photos of Weili (my wife), our parents and I.

    My son, Xiangzhi (Jonathan), was born in May, 2001. I am happy to share his pictures with everyone.

    Office Address:

    Computer and Information Science
    Deschutes Hall, Room 303
    University of Oregon
    Eugene, OR 97403
    Phone: 541-346-4572
    Fax: 541-346-5373
    Email: dou (at) cs.uoregon.edu
    Updated: November 13th 2009