ART is an ancestral reconstruction tool . . .
NAVIGATE: overview | getting started | installation | contents | command-line syntax | projects | ART output
After you deploy the ART package, you will have the following directory structure:
This is the installation directory of your choosing.
The $ART directory contains:
a shell script which executes ART. (Read more about using ART.)
a sample script, which runs a series of ART commands.
Contains template files, including a standard codeml control file and files for MySQL connectivity.
Contains C-programs, which are used for ancestral tree traversal.
Contains customized MySQL table definitions for the current working project.
Contains MySQL table templates, which are copied into the 'mysql' directory during database creation.
Contains perl scripts, which represent the bulk of ART's functionality.
Contains html documentation, which you are presumably reading right now.
Do not modify the contents of ART sub-directories. Doing so can cause unpredictable behavior!