@inproceedings{LePenduEtal09,
  author    = {Paea LePendu and Dejing Dou and Doug Howe},
  title     = {{Detecting Inconsistencies in the Gene Ontology using Ontology Databases with Not-gadgets}},
  booktitle = {Proceedings of the International Conference on Ontologies, Databases and Application of Semantics (ODBASE)},
  pages     = {948-965},
  year      = {2009},
}

@inproceedings{WimalasuriyaDou09,
  author    = {Daya C. Wimalasuriya and Dejing Dou},
  title     = "{Using Multiple Ontologies in Information Extraction}",
  booktitle   = {Proceedings of the 18th ACM Conference
on Information and Knowledge Management (CIKM)},
  pages     = {235-244},
  year      = {2009},
}

@Article{LePenduDou09,
  author    = {Paea LePendu and Dejing Dou},
  title     = "{Ontology Databases}",
  journal   = {Journal of Intelligent Information Systems},
  note = "Under Review, URL: \url{http://www.cs.uoregon.edu/~dou/research/papers/jiis09.pdf}",
  year      = {2009},
}


@Article{DouEtal09b,
  author    = {Dejing Dou and Han Qin and Paea LePendu},
  title     = "{OntoGrate: Towards Automatic Integration for Relational Databases and the Semantic Web through an Ontology-based Framework}",
  journal   = {International Journal of Semantic Computing},
  note = "Under Review, URL: \url{http://www.cs.uoregon.edu/~dou/research/papers/ijsc09.pdf}",
  year      = {2009},
}

@Article{WimalasuriyaDou09,
  author    = {Daya C. Wimalasuriya and Dejing Dou and Sridhar Ramachandran and Paea LePendu},
  title     = "{Ontology-Based Information Extraction: An Introduction and a Survey of Current Approaches}",
  journal   = {Journal of Information Science},
  note = "Under Review, URL: \url{http://www.cs.uoregon.edu/~dou/research/papers/jis09.pdf}",
  year      = {2009},
}


@Article{DouEtal09a,
  author    = {Dejing Dou and Jun Li and Han Qin and Sheng Zhong},
  title     = "{Mining and Sharing the Hierarchy of Abnormal BGP Events}",
  journal   = {Knowledge and Information Systems},
  note = "Under Review, URL: \url{http://www.cs.uoregon.edu/~dou/research/papers/kais09.pdf}",
  year      = {2009},
}

@Article{WimalasuriyaEtal09,
  author    = {Daya C. Wimalasuriya and Dejing Dou and Sridhar Ramachandran and Paea LePendu},
  title     = "{Ontology-Based Integration for Large Model Organism Databases}",
  journal   = {Journal of Integrative Bioinformatics},
  note = "Under Review, URL: \url{http://www.cs.uoregon.edu/~dou/research/papers/jib09.pdf}",
  year      = {2009},
}


@inproceedings{FrishkoffEtal09,
  author = {Gwen Frishkoff and Paea LePendu and Robert Frank and Haishan Liu and Dejing Dou},
  title = {{Development of Neural Electromagnetic Ontologies (NEMO): Ontology-based Tools for Representation
  and Integration of Event-related Brain Potentials}},
  booktitle = {Proceedings of the International Conference on Biomedical Ontology (ICBO)},
  pages     = {31-34},
  year = 2009,
}


@inproceedings{LiuDou08,
  author    = {Haishan Liu and Dejing Dou},
  title     = {{An Exploration of Understanding Heterogeneity through Data Mining}},
  booktitle = {Proceedings of KDD'08 Workshop on Mining Multiple Information Sources},
  pages     = {18-25},
  year      = {2008},
  }

@inproceedings{LePenduEtal08,
  author    = {Paea LePendu and Dejing Dou and Gwen Frishkoff and Jiawei Rong},
  title     = {{Ontology Database: a New Method for Semantic Modeling and an Application to Brainwave Data}},
  booktitle = {Proceedings of the 20th International Conference on Scientific and Statistical Database Management (SSDBM)},
  pages     = {313-330},
  year      = {2008},
  }


@article{FrishkoffEtal07,
   title = {{A Framework to Support Automated Classification and
Labeling of Brain Electromagnetic Patterns}},
   year = "2007",
   author = "Gwen A. Frishkoff and Robert M. Frank and Jiawei Rong and Dejing Dou and Joseph Dien and Laura K.
Halderman",
   journal = "Computational
Intelligence and Neuroscience (CIN), Special Issue, EEG/MEG Analysis
and Signal Processing",
   volume = "7",
   number = "3",
   pages = "1-13"
}

@inproceedings{LiEtal07,
  author    = {Jun Li and
               Dejing Dou and
               Shiwoong Kim and
               Han Qin and
               Yibo Wang},
  title     = {On Knowledge-Based Classification of Abnormal BGP Events},
  booktitle = {ICISS},
  year      = {2007},
  pages     = {267-271},
  ee        = {http://dx.doi.org/10.1007/978-3-540-77086-2_23},
  crossref  = {DBLP:conf/iciss/2007},
  bibsource = {DBLP, http://dblp.uni-trier.de}
}



@inproceedings{QinEtal07,
  author    = {Han Qin and
               Dejing Dou and Paea LePendu},
  title     = {{Discovering Executable Semantic Mappings Between Ontologies}},
  booktitle = {Proceedings of the International Conference on Ontologies, Databases and Application of Semantics (ODBASE)},
  pages     = {832-849},
  year      = {2007},
}

@inproceedings{DouEtal07b,
 author = {Dejing Dou and Gwen Frishkoff and Jiawei Rong and Robert Frank and Allen Malony and Don Tucker},
 title = {{Development of NeuroElectroMagnetic Ontologies (NEMO): A Framework for Mining Brainwave Ontologies.}},
 booktitle = {{Proceedings of the 13th ACM International Conference on
Knowledge Discovery and Data Mining (KDD)}},
 pages = {270-279},
 year = {2007},
 }


@inproceedings{KimEtal07,
 author = {Jongwan Kim and Dejing Dou and Haishan Liu and Donghwi Kwak},
 title = {Constructing A User Preference Ontology for
Anti-spam Mail Systems.},
 booktitle = {Proceedings of the 20th
Canadian Conference on Artificial Intelligence (Canadian AI)},
 pages = {272-283},
 year = {2007},
 }

@inproceedings{RongEtal07,
 author = {Jiawei Rong and Dejing Dou and Gwen Frishkoff and Robert Frank and Allen Malony and Don Tucker},
 title = {{A Semi-automatic Framework for Mining ERP Patterns}},
 booktitle = {Proceedings of The 2007 IEEE International Symposium on Data Mining and Information Retrieval (IEEE DMIR)
},
 year = {2007},
 pages = {329-334},
 }

@inproceedings{DouEtal07a,
 author = {Dejing Dou and Jun Li and Han Qin and Shiwoong Kim and Sheng Zhong},
 title = {Understanding and Utilizing the Hierarchy of Abnormal BGP Events},
 booktitle = {Proceedings of SIAM International Conference
on Data Mining 2007 (SDM)},
 year = {2007},
 pages = {467-472}
 }

@inproceedings{WimalasuriyaEtal07,
 author = {Daya Wimalasuriya and Sridhar Ramachandran and Dejing Dou},
 title = {Clustering Zebrafish Genes Based on Frequent-Itemsets and
Frequency Levels.},
 booktitle = {Proceedings of  Pacific-Asia
Conference on Knowledge Discovery and Data Mining 2007 (PAKDD)},
 pages = {912-920},
 year = {2007},
 }


@inproceedings{DouEtal06b,
   author="Dejing Dou and Jeff Z. Pan and Han Qin and Paea LePendu",
   title="{Towards Populating and Querying the Semantic Web.}",
   booktitle="Proceedings of 2nd International workshop on Scalable Semantic Web
Knowledge Base Systems (SSWS)",
   note="co-located with ISWC 2006",
   pages = "129-142",
   year="2006"}


@inproceedings{DouEtal06,
   author="Dejing Dou and Paea LePendu and Shiwoong Kim and Peishen Qi",
   title="{Integrating Databases into the Semantic Web through an
Ontology-based Framework}",
   booktitle="Proceedings of the third
International Workshop on Semantic Web and Databases (SWDB)",
   note="co-located with ICDE 2006",
   pages = "54",
   year="2006"}



@inproceedings{DouMcDermott06_invited,
  author    = {Dejing Dou and
               Drew V. McDermott},
  title     = {Towards Theory Translation.},
  booktitle = {Post-Proceedings of The 4th International Workshop on
Declarative Agent Languages and Technologies (DALT) (invited paper)},
  year      = {2006},
  pages     = {16-28},
  ee        = {http://dx.doi.org/10.1007/11961536_2},
  crossref  = {DBLP:conf/dalt/2006},
  bibsource = {DBLP, http://dblp.uni-trier.de}
}


@inproceedings{DouMcDermott06,
   author="Dejing Dou and Drew McDermott",
   title="{Deriving Axioms Across Ontologies}",
   booktitle="Proceedings of International Joint Conference on Autonomous Agents and Multi-Agent Systems (AAMAS) (short paper)",
   pages = "952--954",
   year="2006"}


@inproceedings{DouLePendu06,
 author = {Dejing Dou and Paea LePendu},
 title = {Ontology-based {I}ntegration for {R}elational {D}atabases},
 booktitle = {SAC '06: Proceedings of the 2006 ACM symposium on Applied computing},
 year = {2006},
 isbn = {1-59593-108-2},
 pages = {461--466},
 location = {Dijon, France},
 doi = {http://doi.acm.org/10.1145/1141277.1141387},
 }


@inproceedings{DouLePendu05,
   author="Dejing Dou and Paea LePendu",
   title="{Ontology-based {I}ntegration for {R}elational {D}ata}",
   booktitle = "{\it Proceedings of International Conference on Ontologies, Databases and Application of SEmantics (ODBASE) (poster paper)}",
   pages = "LNCS 3762, 35-36",
   year="2005"}

@article{LiEtal05,
   title = "An Internet Routing Forensics Framework for Discovering
Rules of Abnormal BGP Events",
   year = "2005",
   author = "Jun Li and Dejing Dou and Zhen Wu and Shiwoong Kim and Vikash Agarwal",
   journal = "ACM Computer Communication Review",
    pages = "58-66",
   number = "5",
   volume = "35",
}


@Article{DouMQ05,
  author    = {Dejing Dou and Drew V. McDermott and Peishen Qi},
  title     = "{Ontology {T}ranslation on the {S}emantic {W}eb}",
  journal   = {Journal on Data Semantics},
  volume    = {2},
  year      = {2004},
  pages     = {35-57},
  ee        = {http://springerlink.metapress.com/openurl.asp?genre=article{\&}issn=0302-9743{\&}volume=3360{\&}spage=35},
}

@inproceedings{DouEtal03,
  author    = {Dejing Dou and
               Drew V. McDermott and
               Peishen Qi},
  title     = {{O}ntology {T}ranslation on the {S}emantic {W}eb.},
  booktitle = {Proceedings of the International Conference on Ontologies, Databases and Application of Semantics (ODBASE)},
  year      = {2003},
  pages     = {952-969},
  ee        = {http://springerlink.metapress.com/openurl.asp?genre=article{\&}issn=0302-9743{\&}volume=2888{\&}spage=952},
  crossref  = {DBLP:conf/coopis/2003},
  bibsource = {DBLP, http://dblp.uni-trier.de}
}

@inproceedings{DouEtal02,
   author="Dejing Dou and Drew McDermott and Peishen Qi",
   title="{O}ntology {T}ranslation by {O}ntology {M}erging and {A}utomated {R}easoning",
   booktitle="Proceedings of EKAW Workshop on Ontologies for Multi-Agent Systems",
   pages="3--18",
   year="2002"}


@inproceedings{McDermottDou02,
  author    = {Drew V. McDermott and Dejing Dou},
  title     = {Representing {D}isjunction and {Q}uantifiers in {RDF}},
  booktitle = {International Semantic Web Conference},
  year      = {2002},
  pages     = {250-263},
  ee        = {http://link.springer.de/link/service/series/0558/bibs/2342/23420250.htm},
  bibsource = {DBLP, http://dblp.uni-trier.de}
}